STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PPY9_AMBTCArg_tRNA_synt_N domain-containing protein. (645 aa)    
Predicted Functional Partners:
W1PL49_AMBTC
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.827
W1PV46_AMBTC
Uncharacterized protein.
    
 
 0.578
W1P0A2_AMBTC
ClpS domain-containing protein.
   
  
 0.571
U5DG81_AMBTC
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
      
 0.536
W1P009_AMBTC
Nt_Gln_amidase domain-containing protein.
      
 0.536
W1P8B0_AMBTC
Glutamine amidotransferase type-2 domain-containing protein.
      
 0.514
U5D8V3_AMBTC
Uncharacterized protein.
   
  
 0.472
U5D0L3_AMBTC
Uncharacterized protein.
      
 0.453
W1PD47_AMBTC
Glyco_trans_2-like domain-containing protein.
      
 0.435
W1P4U6_AMBTC
HECT domain-containing protein.
   
  
 0.402
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (30%) [HD]