STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PR54_AMBTCUncharacterized protein. (162 aa)    
Predicted Functional Partners:
W1P6U2_AMBTC
3'-5' exonuclease domain-containing protein.
   
 0.931
W1PBA6_AMBTC
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.931
W1PSB0_AMBTC
Uncharacterized protein.
   
 0.887
W1P8R0_AMBTC
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.885
W1P8Y8_AMBTC
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.885
W1P5A8_AMBTC
Uncharacterized protein.
   
 0.879
W1PBU8_AMBTC
Uncharacterized protein.
   
 0.879
U5CWJ1_AMBTC
GIY-YIG domain-containing protein.
   
 0.869
W1PCH4_AMBTC
Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.
   
 0.869
W1PCQ7_AMBTC
LOB domain-containing protein.
   
 0.869
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.