STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PRD6_AMBTCUncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (378 aa)    
Predicted Functional Partners:
U5D3B2_AMBTC
Ribosomal_L18e/L15P domain-containing protein.
 
 
 
  0.549
U5CZI8_AMBTC
Ribosomal_L28e domain-containing protein.
   
   0.480
W1PV35_AMBTC
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 
 0.430
W1PN43_AMBTC
Ribosomal_L2_C domain-containing protein.
   
 
 0.429
W1PQY2_AMBTC
Uncharacterized protein.
   
 
 0.423
W1P855_AMBTC
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
   0.415
U5DCK1_AMBTC
Ribosomal_L18_c domain-containing protein.
   
   0.414
W1NV70_AMBTC
Uncharacterized protein.
   
   0.412
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.