STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PRF6_AMBTCHSA domain-containing protein. (810 aa)    
Predicted Functional Partners:
W1P4P3_AMBTC
Myb-like domain-containing protein.
 
   
  0.815
U5D1L8_AMBTC
RuvB-like helicase.
    
 0.731
U5D3I2_AMBTC
RuvB-like helicase; Belongs to the RuvB family.
    
 0.731
W1P6F2_AMBTC
FHA domain-containing protein.
    
  0.704
W1PDC9_AMBTC
Uncharacterized protein; Belongs to the actin family.
    
 0.687
U5DGE4_AMBTC
Uncharacterized protein; Belongs to the actin family.
   
 0.680
W1NX64_AMBTC
Uncharacterized protein; Belongs to the actin family.
   
 0.680
W1NFX0_AMBTC
SANT domain-containing protein.
    
 0.663
W1PPT9_AMBTC
Myb-like domain-containing protein.
 
  
  0.662
W1P9S9_AMBTC
YL1_C domain-containing protein.
    
 0.631
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.