STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PUM1_AMBTCRav1p_C domain-containing protein. (1909 aa)    
Predicted Functional Partners:
W1PN03_AMBTC
Uncharacterized protein.
 
   
  0.901
W1NPH5_AMBTC
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
    
 
 0.779
W1NGR4_AMBTC
Uncharacterized protein; Belongs to the SKP1 family.
    
 
 0.603
W1PQQ3_AMBTC
Uncharacterized protein; Belongs to the SKP1 family.
    
 
 0.603
W1PKY5_AMBTC
Rav1p_C domain-containing protein.
  
  
 
0.543
W1NPE3_AMBTC
Uncharacterized protein.
     
 
0.540
W1NZ79_AMBTC
VIR_N domain-containing protein.
  
 
   0.536
W1PES7_AMBTC
V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
    
 
 0.535
W1NYK8_AMBTC
NTP_transf_2 domain-containing protein.
  
     0.500
W1PHY0_AMBTC
Uncharacterized protein.
  
    0.490
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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