STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PVF2_AMBTCRibosomal_L2_C domain-containing protein. (142 aa)    
Predicted Functional Partners:
U5DCK1_AMBTC
Ribosomal_L18_c domain-containing protein.
  
 0.934
W1NT99_AMBTC
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.931
rpl16
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
 
 0.928
W1NLR4_AMBTC
Uncharacterized protein.
 
 0.927
U5DDP5_AMBTC
Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.
 
 0.915
U5CUB2_AMBTC
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.912
W1NT80_AMBTC
Uncharacterized protein.
   
 
 0.912
U5DAD7_AMBTC
Uncharacterized protein.
   
 0.911
W1PQY2_AMBTC
Uncharacterized protein.
   
 0.910
W1PTS5_AMBTC
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.910
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.