STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PVX4_AMBTCUncharacterized protein. (401 aa)    
Predicted Functional Partners:
W1PUA2_AMBTC
Uncharacterized protein.
   
 
 0.840
W1NF09_AMBTC
Uncharacterized protein.
    
 
 0.833
W1PPE0_AMBTC
ThiF domain-containing protein.
   
 
 0.715
U5D1E0_AMBTC
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
  
 
 
 0.693
W1PDG8_AMBTC
Uncharacterized protein.
   
 
 0.552
U5D5T8_AMBTC
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
   
 
 0.540
W1PXY3_AMBTC
E2_bind domain-containing protein.
     
 0.534
W1PBG0_AMBTC
Uncharacterized protein.
      
 0.451
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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