W1PX41_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1PX41_AMBTC

Uncharacterized protein. (556 aa)

Predicted Functional Partners:

U5D005_AMBTC

0.891

W1PJ72_AMBTC

0.815

U5D611_AMBTC

0.721

W1PPK0_AMBTC

0.701

W1PCY2_AMBTC

0.688

W1PFP5_AMBTC

0.679

U5DD23_AMBTC

0.668

W1NWR1_AMBTC

0.651

W1NDV0_AMBTC

0.642

U5D252_AMBTC

0.627

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5D005_AMBTC	U5D252_AMBTC	U5D005	U5D252	Uncharacterized protein.	Uncharacterized protein; Belongs to the TPP enzyme family.	0.919
U5D005_AMBTC	U5DD23_AMBTC	U5D005	U5DD23	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.998
U5D005_AMBTC	W1NWR1_AMBTC	U5D005	W1NWR1	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.973
U5D005_AMBTC	W1PCY2_AMBTC	U5D005	W1PCY2	Uncharacterized protein.	MR_MLE domain-containing protein.	0.439
U5D005_AMBTC	W1PFP5_AMBTC	U5D005	W1PFP5	Uncharacterized protein.	E1_dh domain-containing protein.	0.551
U5D005_AMBTC	W1PJ72_AMBTC	U5D005	W1PJ72	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.767
U5D005_AMBTC	W1PX41_AMBTC	U5D005	W1PX41	Uncharacterized protein.	Uncharacterized protein.	0.891
U5D252_AMBTC	U5D005_AMBTC	U5D252	U5D005	Uncharacterized protein; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.919
U5D252_AMBTC	U5DD23_AMBTC	U5D252	U5DD23	Uncharacterized protein; Belongs to the TPP enzyme family.	Pyruvate carboxyltransferase domain-containing protein.	0.727
U5D252_AMBTC	W1NDV0_AMBTC	U5D252	W1NDV0	Uncharacterized protein; Belongs to the TPP enzyme family.	Transket_pyr domain-containing protein.	0.491
U5D252_AMBTC	W1NWR1_AMBTC	U5D252	W1NWR1	Uncharacterized protein; Belongs to the TPP enzyme family.	Pyruvate carboxyltransferase domain-containing protein.	0.558
U5D252_AMBTC	W1PCY2_AMBTC	U5D252	W1PCY2	Uncharacterized protein; Belongs to the TPP enzyme family.	MR_MLE domain-containing protein.	0.458
U5D252_AMBTC	W1PFP5_AMBTC	U5D252	W1PFP5	Uncharacterized protein; Belongs to the TPP enzyme family.	E1_dh domain-containing protein.	0.726
U5D252_AMBTC	W1PJ72_AMBTC	U5D252	W1PJ72	Uncharacterized protein; Belongs to the TPP enzyme family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.574
U5D252_AMBTC	W1PX41_AMBTC	U5D252	W1PX41	Uncharacterized protein; Belongs to the TPP enzyme family.	Uncharacterized protein.	0.627
U5D611_AMBTC	W1PCY2_AMBTC	U5D611	W1PCY2	Pterin-binding domain-containing protein.	MR_MLE domain-containing protein.	0.839
U5D611_AMBTC	W1PJ72_AMBTC	U5D611	W1PJ72	Pterin-binding domain-containing protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.435
U5D611_AMBTC	W1PPK0_AMBTC	U5D611	W1PPK0	Pterin-binding domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.850
U5D611_AMBTC	W1PX41_AMBTC	U5D611	W1PX41	Pterin-binding domain-containing protein.	Uncharacterized protein.	0.721
U5DD23_AMBTC	U5D005_AMBTC	U5DD23	U5D005	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.998