STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PXG4_AMBTCtRNA pseudouridine synthase. (371 aa)    
Predicted Functional Partners:
U5CZT5_AMBTC
RPOLD domain-containing protein.
  
  
 0.680
U5DCR5_AMBTC
RPOLD domain-containing protein.
  
  
 0.680
W1P9M2_AMBTC
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.624
W1PES1_AMBTC
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.624
W1P200_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
 
 0.603
W1PXE1_AMBTC
Uncharacterized protein.
   
 
 0.585
U5CVJ2_AMBTC
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.564
W1NV91_AMBTC
TRUD domain-containing protein.
   
 
 0.514
W1PXZ7_AMBTC
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
   0.512
U5DEI1_AMBTC
Uncharacterized protein.
   
 0.499
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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