STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB560_005089AA_permease domain-containing protein. (246 aa)    
Predicted Functional Partners:
BB560_004657
Uncharacterized protein.
    
 0.658
BB560_001740
Uncharacterized protein.
    
 0.658
BB560_000977
SH3 domain-containing protein.
    
 0.658
BB560_000892
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 0.583
BB560_002832
PRAI domain-containing protein.
   
 
 0.576
BB560_000899
WD_REPEATS_REGION domain-containing protein.
    
 0.495
BB560_004676
Histone H3; Belongs to the histone H3 family.
   
 0.482
BB560_000384
Histone H3; Belongs to the histone H3 family.
   
 0.482
BB560_007319
Nudix hydrolase domain-containing protein.
    
  0.481
BB560_006237
Nudix hydrolase domain-containing protein.
    
  0.481
Your Current Organism:
Smittium megazygosporum
NCBI taxonomy Id: 133381
Other names: S. megazygosporum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.