STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB560_001324AA_TRNA_LIGASE_II domain-containing protein. (792 aa)    
Predicted Functional Partners:
BB560_003715
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.768
BB560_006814
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.719
BB560_001249
Tr-type G domain-containing protein.
 
 0.698
BB560_004751
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.696
ALA1
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.692
BB560_004287
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.685
BB560_003727
Uncharacterized protein.
   
 
 0.685
BB560_004452
Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.683
BB560_003980
Tr-type G domain-containing protein.
   
 
 0.676
BB560_001760
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.666
Your Current Organism:
Smittium megazygosporum
NCBI taxonomy Id: 133381
Other names: S. megazygosporum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.