STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI68_g5247Zinc finger CCCH domain-containing protein 28. (944 aa)    
Predicted Functional Partners:
AYI68_g4535
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 0.821
AYI68_g3108
Uncharacterized protein.
    
 0.707
AYI68_g5131
Exosome complex component SKI6.
    
  0.669
AYI68_g3867
General negative regulator of transcription subunit 1.
    
 
 0.668
AYI68_g3337
Exosome complex component RRP4.
    
 0.665
AYI68_g3840
14-3-3 protein 2; Belongs to the 14-3-3 family.
   
  0.634
AYI68_g642
DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.
   
  0.634
AYI68_g7131
Uncharacterized protein.
   
 0.615
AYI68_g6154
Uncharacterized protein.
   
 0.615
AYI68_g6066
Uncharacterized protein.
   
 0.615
Your Current Organism:
Smittium mucronatum
NCBI taxonomy Id: 133383
Other names: S. mucronatum
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