STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI68_g3867General negative regulator of transcription subunit 1. (2109 aa)    
Predicted Functional Partners:
AYI68_g3976
General negative regulator of transcription subunit 4.
    
 0.997
AYI68_g6816
Cell differentiation protein rcd1.
    
 0.996
AYI68_g3060
General negative regulator of transcription subunit 3.
    
 0.996
AYI68_g3169
Glucose-repressible alcohol dehydrogenase transcriptional effector.
   
 0.995
AYI68_g7402
General negative regulator of transcription subunit 2.
   
 0.981
AYI68_g2293
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
   
 0.980
AYI68_g7996
Coupling of ubiquitin conjugation to ER degradation protein 1.
   
 0.972
AYI68_g7914
DNA topoisomerase 2-associated protein pat1.
    
 
 0.919
AYI68_g2936
Protein BTG2.
    
 0.855
AYI68_g1908
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
    
 0.783
Your Current Organism:
Smittium mucronatum
NCBI taxonomy Id: 133383
Other names: S. mucronatum
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