STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI68_g1359Uncharacterized protein. (443 aa)    
Predicted Functional Partners:
AYI68_g5503
SAGA complex subunit spt3.
    
  0.693
AYI68_g3772
Actin cytoskeleton-regulatory complex protein PAN1.
    
 0.690
SUS1
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
    
 0.631
AYI68_g5833
SAGA-associated factor 73.
    
 0.615
AYI68_g5536
Chromatin-remodeling complexes subunit ngg1.
    
 0.594
AYI68_g3873
Uracil phosphoribosyltransferase 1.
    
 0.581
AYI68_g2522
TFIID_20kDa domain-containing protein.
    
 0.581
AYI68_g843
Uncharacterized protein.
    
 0.575
AYI68_g2895
Transcription initiation factor TFIID subunit 10.
    
  0.572
AYI68_g4091
DUF4203 domain-containing protein.
    
 0.560
Your Current Organism:
Smittium mucronatum
NCBI taxonomy Id: 133383
Other names: S. mucronatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.