STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI68_g489Nucleolysin TIA-1. (392 aa)    
Predicted Functional Partners:
AYI68_g534
Small nuclear ribonucleoprotein Sm D2.
   
 0.814
AYI68_g2573
Uncharacterized protein.
   
 0.813
AYI68_g4521
Pre-mRNA polyadenylation factor fip1.
   
 0.810
AYI68_g1557
Small nuclear ribonucleoprotein F.
   
 0.804
AYI68_g4484
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.803
AYI68_g325
Uncharacterized protein.
    
 0.790
AYI68_g3639
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.779
AYI68_g1954
Splicing factor U2AF 50 kDa subunit.
   
 0.777
AYI68_g5274
Nuclear cap-binding protein subunit 2.
    
 0.773
AYI68_g5081
Nuclear cap-binding protein subunit 1.
    
 0.769
Your Current Organism:
Smittium mucronatum
NCBI taxonomy Id: 133383
Other names: S. mucronatum
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