STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN73762.1Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (362 aa)    
Predicted Functional Partners:
SEN73819.1
Putative spermidine/putrescine transport system permease protein.
 
 0.988
SEN73792.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.975
SEN71034.1
Spermidine/putrescine transport system substrate-binding protein.
 
 
 0.939
SEO71371.1
ABC-type spermidine/putrescine transport system, permease component I.
 
 0.930
SEN71095.1
Spermidine/putrescine transport system permease protein.
 0.926
SEN71063.1
Spermidine/putrescine transport system permease protein.
 
 
 0.922
SEO71442.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.900
SEP04529.1
iron(III) transport system permease protein.
 
 
 0.806
SEO06487.1
iron(III) transport system permease protein.
 
 
 0.775
SEN73231.1
iron(III) transport system permease protein.
 
 
 0.774
Your Current Organism:
Paenibacillus sophorae
NCBI taxonomy Id: 1333845
Other names: CGMCC 1.10238, DSM 23020, P. sophorae, Paenibacillus sophorae Jin et al. 2011, strain S27
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