STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspISmall acid-soluble spore protein I (minor); Belongs to the SspI family. (80 aa)    
Predicted Functional Partners:
SEP14911.1
Trk system potassium uptake protein TrkA.
       0.762
SEN33784.1
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.747
SEO62082.1
Hypothetical protein.
  
    0.742
SEP14895.1
RNA methyltransferase, TrmH family.
       0.734
SEO61536.1
Prespore-specific regulator.
  
     0.720
SEO04131.1
Outer membrane lipoprotein-sorting protein.
  
     0.687
SEP12276.1
Protein YqhG of unknown function.
  
     0.687
SEN37802.1
Spore coat protein E.
  
     0.679
SEO54605.1
Sporulation related domain-containing protein.
  
     0.665
SEN33754.1
Spore germination protein Q.
  
     0.653
Your Current Organism:
Paenibacillus sophorae
NCBI taxonomy Id: 1333845
Other names: CGMCC 1.10238, DSM 23020, P. sophorae, Paenibacillus sophorae Jin et al. 2011, strain S27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.