BB561_003168 protein (Smittium simulii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BB561_003168

Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (541 aa)

Predicted Functional Partners:

BB561_002838

0.881

BB561_000501

0.881

BB561_005922

0.682

BB561_002413

0.682

BB561_001356

0.682

BB561_003909

0.676

BB561_003838

0.676

BB561_001812

0.667

BB561_004263

0.639

BB561_004244

0.624

Your Current Organism:

Smittium simulii

NCBI taxonomy Id: 133385
Other names: S. simulii, Smittium simuli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BB561_000501	BB561_003168	A0A2T9YYT4	A0A2T9YMP0	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.881
BB561_001356	BB561_003168	A0A2T9YV12	A0A2T9YMP0	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.682
BB561_001356	BB561_004244	A0A2T9YV12	A0A2T9YHD0	Uncharacterized protein.	Uncharacterized protein.	0.541
BB561_001356	BB561_004263	A0A2T9YV12	A0A2T9YH35	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.405
BB561_001812	BB561_003168	A0A2T9YT32	A0A2T9YMP0	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.667
BB561_002413	BB561_003168	A0A2T9YQH6	A0A2T9YMP0	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.682
BB561_002413	BB561_004244	A0A2T9YQH6	A0A2T9YHD0	Uncharacterized protein.	Uncharacterized protein.	0.541
BB561_002413	BB561_004263	A0A2T9YQH6	A0A2T9YH35	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.405
BB561_002838	BB561_003168	A0A2T9YNY6	A0A2T9YMP0	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.881
BB561_003168	BB561_000501	A0A2T9YMP0	A0A2T9YYT4	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.881
BB561_003168	BB561_001356	A0A2T9YMP0	A0A2T9YV12	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.682
BB561_003168	BB561_001812	A0A2T9YMP0	A0A2T9YT32	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.667
BB561_003168	BB561_002413	A0A2T9YMP0	A0A2T9YQH6	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.682
BB561_003168	BB561_002838	A0A2T9YMP0	A0A2T9YNY6	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.881
BB561_003168	BB561_003838	A0A2T9YMP0	A0A2T9YJ85	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.676
BB561_003168	BB561_003909	A0A2T9YMP0	A0A2T9YJ05	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.676
BB561_003168	BB561_004244	A0A2T9YMP0	A0A2T9YHD0	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.624
BB561_003168	BB561_004263	A0A2T9YMP0	A0A2T9YH35	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Guanylate kinase-like domain-containing protein.	0.639
BB561_003168	BB561_005922	A0A2T9YMP0	A0A2T9Y7I1	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.682
BB561_003838	BB561_003168	A0A2T9YJ85	A0A2T9YMP0	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.676