STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB561_002470Ubiquitin-like domain-containing protein. (108 aa)    
Predicted Functional Partners:
BB561_003442
Matrin-type domain-containing protein.
   
 0.981
BB561_000718
PSP domain-containing protein.
   
 0.977
BB561_003998
Matrin-type domain-containing protein.
   
 0.974
BB561_006134
SF3b1 domain-containing protein.
   
 0.969
BB561_003999
CPSF_A domain-containing protein.
   
 0.968
BB561_000555
Uncharacterized protein.
   
 0.963
BB561_002001
Uncharacterized protein.
   
 0.960
BB561_001980
Uncharacterized protein.
    
 0.953
BB561_003633
Uncharacterized protein.
   
 0.950
BB561_002476
Sm domain-containing protein.
   
 0.950
Your Current Organism:
Smittium simulii
NCBI taxonomy Id: 133385
Other names: S. simulii, Smittium simuli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.