STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB561_002092Uncharacterized protein. (698 aa)    
Predicted Functional Partners:
BB561_001472
V-SNARE coiled-coil homology domain-containing protein.
    
 0.634
BB561_005925
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.628
BB561_002467
Uncharacterized protein.
   
 
 0.628
BB561_003881
Uncharacterized protein.
    
 
 0.625
BB561_004043
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.568
BB561_003706
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
  0.523
BB561_000401
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.518
BB561_002018
AP-1 complex subunit gamma.
     
 0.510
BB561_000301
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.504
BB561_007018
GED domain-containing protein.
    
 0.495
Your Current Organism:
Smittium simulii
NCBI taxonomy Id: 133385
Other names: S. simulii, Smittium simuli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.