STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB561_002003Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (251 aa)    
Predicted Functional Partners:
BB561_005108
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
  
 0.996
BB561_004415
Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.
 
 0.995
BB561_005670
Ribosomal_L18e/L15P domain-containing protein.
  
 0.994
BB561_004257
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.994
BB561_005895
Uncharacterized protein.
   
 
 0.992
BB561_004108
Uncharacterized protein.
  
 
 0.992
BB561_003368
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
 
 
 0.992
BB561_002631
Uncharacterized protein.
  
 
 0.991
BB561_000269
Uncharacterized protein.
  
 0.990
BB561_002119
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.989
Your Current Organism:
Smittium simulii
NCBI taxonomy Id: 133385
Other names: S. simulii, Smittium simuli
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