STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M2A_0295UspA domain-containing protein. (174 aa)    
Predicted Functional Partners:
M2A_2087
Conserved protein.
 
     0.805
M2A_2088
Integral membrane protein, putative.
 
   
 0.800
M2A_0294
Conserved protein.
       0.652
M2A_0296
Scaffold protein Nfu/NifU.
     
 0.617
M2A_2063
Conserved protein.
  
     0.614
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.592
M2A_1924
Conserved protein.
  
     0.568
M2A_0605
Ubiquinol-cytochrome C chaperone.
  
     0.554
M2A_0297
Peptidase M22 glycoprotease.
       0.543
M2A_0298
Acetyltransferases; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.543
Your Current Organism:
Tepidicaulis marinus
NCBI taxonomy Id: 1333998
Other names: DSM 27167, NBRC 109643, T. marinus, Tepidicaulis marinus Takeuchi et al. 2015, alpha proteobacterium MA2, strain MA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.