STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M2A_0678Sel1 domain-containing protein. (89 aa)    
Predicted Functional Partners:
M2A_1280
Hpt protein.
  
     0.660
M2A_0914
Conserved protein.
  
     0.612
M2A_2089
Peptidoglycan-binding domain-containing protein.
  
     0.596
M2A_1833
Pilus biogenesis lipoprotein CpaD.
  
     0.581
M2A_1840
TadE family protein.
  
     0.558
M2A_1836
Peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
  
     0.551
M2A_0385
Sensor protein.
   
 0.546
M2A_2379
Conserved protein.
   
 0.514
M2A_0282
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.505
M2A_2547
Type IV pilus assembly PilZ.
  
     0.499
Your Current Organism:
Tepidicaulis marinus
NCBI taxonomy Id: 1333998
Other names: DSM 27167, NBRC 109643, T. marinus, Tepidicaulis marinus Takeuchi et al. 2015, alpha proteobacterium MA2, strain MA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.