STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M2A_1109FeS assembly protein SufB. (482 aa)    
Predicted Functional Partners:
M2A_1106
SufS subfamily cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.999
M2A_1107
FeS assembly protein SufD.
 
0.999
M2A_1108
FeS assembly ATPase SufC.
 
 0.999
M2A_1105
FeS assembly SUF system protein.
   
 0.984
M2A_1104
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.974
M2A_1620
Fe-S metabolism associated SufE.
 
 0.948
M2A_2935
Class V aminotransferase family prorein.
 
 
 0.910
M2A_2524
NifU-like N terminal domain, putative.
  
  
 0.901
M2A_1110
Class V aminotransferase.
  
  
 0.786
M2A_1111
BadM/Rrf2 family transcriptional regulator.
     
 0.671
Your Current Organism:
Tepidicaulis marinus
NCBI taxonomy Id: 1333998
Other names: DSM 27167, NBRC 109643, T. marinus, Tepidicaulis marinus Takeuchi et al. 2015, alpha proteobacterium MA2, strain MA2
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