STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M2A_1439Putative methylisocitrate lyase. (287 aa)    
Predicted Functional Partners:
M2A_1501
Citrate synthase 2; Belongs to the citrate synthase family.
 
 0.955
M2A_3257
MmgE/PrpD family protein.
 
  
 0.950
M2A_1502
Putative citrate synthase; Belongs to the citrate synthase family.
 0.938
M2A_1151
Carbamoyl-phosphate synthase L chain ATP-binding.
  
 0.934
M2A_1026
Citrate synthase I; Belongs to the citrate synthase family.
 
 0.928
M2A_1410
Malate synthase; Belongs to the malate synthase family.
   
 
 0.916
M2A_0287
Malic enzyme.
    
 0.897
M2A_0993
Pyruvate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.859
M2A_0747
Aconitate hydratase 1.
  
 0.796
M2A_1438
Thioesterase superfamily protein.
       0.773
Your Current Organism:
Tepidicaulis marinus
NCBI taxonomy Id: 1333998
Other names: DSM 27167, NBRC 109643, T. marinus, Tepidicaulis marinus Takeuchi et al. 2015, alpha proteobacterium MA2, strain MA2
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