M2A_1778 protein (Tepidicaulis marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M2A_1778

Conserved protein. (264 aa)

Predicted Functional Partners:

M2A_1767

0.983

fliE-2

0.980

M2A_1222

0.978

M2A_1771

0.972

M2A_1768

0.969

M2A_1755

0.947

flgK

0.947

flgH-2

0.941

M2A_1779

0.935

fliE

0.931

Your Current Organism:

Tepidicaulis marinus

NCBI taxonomy Id: 1333998
Other names: DSM 27167, NBRC 109643, T. marinus, Tepidicaulis marinus Takeuchi et al. 2015, alpha proteobacterium MA2, strain MA2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2A_1222	M2A_1755	M2A_1222	M2A_1755	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.993
M2A_1222	M2A_1768	M2A_1222	M2A_1768	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein FlgB, putative; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.990
M2A_1222	M2A_1771	M2A_1222	M2A_1771	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar hook protein FlgE.	0.991
M2A_1222	M2A_1778	M2A_1222	M2A_1778	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Conserved protein.	0.978
M2A_1222	M2A_1779	M2A_1222	M2A_1779	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar protein.	0.539
M2A_1222	flgH-2	M2A_1222	M2A_1773	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.985
M2A_1222	flgK	M2A_1222	M2A_1770	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar hook-associated protein 1 FlgK, putative.	0.966
M2A_1222	fliE	M2A_1222	M2A_1221	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar hook-basal body complex subunit FliE.	0.994
M2A_1222	fliE-2	M2A_1222	M2A_1766	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	FliE protein.	0.983
M2A_1755	M2A_1222	M2A_1755	M2A_1222	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.993
M2A_1755	M2A_1767	M2A_1755	M2A_1767	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.993
M2A_1755	M2A_1768	M2A_1755	M2A_1768	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein FlgB, putative; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.986
M2A_1755	M2A_1771	M2A_1755	M2A_1771	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar hook protein FlgE.	0.987
M2A_1755	M2A_1778	M2A_1755	M2A_1778	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Conserved protein.	0.947
M2A_1755	M2A_1779	M2A_1755	M2A_1779	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar protein.	0.594
M2A_1755	flgH-2	M2A_1755	M2A_1773	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.985
M2A_1755	flgK	M2A_1755	M2A_1770	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar hook-associated protein 1 FlgK, putative.	0.966
M2A_1755	fliE	M2A_1755	M2A_1221	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar hook-basal body complex subunit FliE.	0.956
M2A_1755	fliE-2	M2A_1755	M2A_1766	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	FliE protein.	0.971
M2A_1767	M2A_1755	M2A_1767	M2A_1755	Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.993