STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI70_g11522Ubiquitin-60S ribosomal protein L40. (127 aa)    
Predicted Functional Partners:
AYI70_g2125
Histone H2A deubiquitinase MYSM1.
   
 0.999
AYI70_g11843
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.995
AYI70_g11163
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.994
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.994
AYI70_g7442
Next to BRCA1 gene 1 protein.
    
 0.994
AYI70_g1498
40S ribosomal protein S17.
   
 0.994
AYI70_g11617
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.993
AYI69_g3108
40S ribosomal protein S13-1; Belongs to the universal ribosomal protein uS15 family.
   
 0.993
AYI70_g1039
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.993
AYI70_g7651
40S ribosomal protein S3-1; Belongs to the universal ribosomal protein uS3 family.
   
 0.993
Your Current Organism:
Smittium culicis
NCBI taxonomy Id: 133412
Other names: S. culicis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.