STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI70_g10259E3 ubiquitin-protein ligase COP1. (599 aa)    
Predicted Functional Partners:
AYI70_g9432
Polyubiquitin.
    
 0.980
AYI70_g5995
Ubiquitin-60S ribosomal protein L40.
    
 0.956
AYI69_g10355
Ubiquitin-40S ribosomal protein S27a.
    
 0.956
AYI70_g3338
Dual-specificity RNA methyltransferase RlmN.
   
 0.920
AYI70_g1610
Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.905
AYI70_g3943
Uncharacterized protein.
    
 0.905
AYI70_g2228
Protein PEROXIN-4.
    
 0.905
AYI70_g1278
Putative serine/threonine-protein kinase/receptor.
   
 0.887
AYI70_g6908
Glycogen synthase kinase-3 beta; Belongs to the protein kinase superfamily.
   
 0.869
AYI70_g11522
Ubiquitin-60S ribosomal protein L40.
    
  0.868
Your Current Organism:
Smittium culicis
NCBI taxonomy Id: 133412
Other names: S. culicis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.