STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI70_g9623E3 ubiquitin-protein ligase TOM1-like. (4637 aa)    
Predicted Functional Partners:
AYI70_g9432
Polyubiquitin.
   
 0.987
AYI69_g10355
Ubiquitin-40S ribosomal protein S27a.
   
 0.949
AYI70_g3892
Uncharacterized protein.
    
 0.904
AYI70_g3893
Uncharacterized protein.
    
 0.904
AYI70_g1378
Uncharacterized protein.
    
 0.904
AYI70_g5995
Ubiquitin-60S ribosomal protein L40.
   
 0.850
AYI70_g11522
Ubiquitin-60S ribosomal protein L40.
    
 0.821
AYI70_g660
E3 ubiquitin-protein ligase TRIP12.
   
 
0.749
AYI70_g9422
Ubiquitin-like modifier-activating enzyme ATG7.
    
 0.736
AYI70_g8431
Ubiquitin-like modifier-activating enzyme ATG7.
    
 0.736
Your Current Organism:
Smittium culicis
NCBI taxonomy Id: 133412
Other names: S. culicis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.