STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI70_g5803Zinc finger protein 36, C3H1 type-like 1. (493 aa)    
Predicted Functional Partners:
AYI70_g10159
Exosome complex component RRP43.
    
  0.834
AYI70_g10635
Exosome complex component RRP43.
    
  0.834
AYI70_g1978
mRNA-decapping enzyme 1B.
    
 0.776
AYI70_g3844
Exosome complex component RRP46.
    
  0.748
AYI70_g8116
5'-3' exoribonuclease 1.
    
 0.745
AYI70_g7733
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 0.745
AYI70_g6960
5'-3' exoribonuclease 1.
    
 0.745
AYI70_g5522
5'-3' exoribonuclease 1.
    
 0.745
AYI70_g1205
5'-3' exoribonuclease 1.
    
 0.745
AYI70_g10015
Exosome complex component RRP41.
    
  0.743
Your Current Organism:
Smittium culicis
NCBI taxonomy Id: 133412
Other names: S. culicis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.