STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI70_g5038Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (189 aa)    
Predicted Functional Partners:
AYI70_g9936
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.999
AYI70_g6832
Centromere/microtubule-binding protein cbf5.
  
 0.999
AYI70_g12340
tRNA pseudouridine synthase 4.
  
 0.997
AYI70_g2430
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.997
AYI70_g252
Nucleolar protein 56.
   
 0.994
AYI70_g5990
Nucleolar protein 58.
   
 0.994
AYI70_g5728
H/ACA ribonucleoprotein complex non-core subunit NAF1.
   
 
 0.984
AYI69_g3
60S ribosome subunit biogenesis protein nip7.
   
 0.983
AYI70_g6552
60S ribosomal protein L5.
  
 0.982
AYI70_g7651
40S ribosomal protein S3-1; Belongs to the universal ribosomal protein uS3 family.
  
 0.979
Your Current Organism:
Smittium culicis
NCBI taxonomy Id: 133412
Other names: S. culicis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.