AYI70_g2696 protein (Smittium culicis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AYI70_g2696

TPR repeat-containing protein. (970 aa)

Predicted Functional Partners:

AYI70_g2057

0.880

AYI70_g6080

0.873

AYI70_g9814

0.849

AYI70_g6183

0.838

AYI70_g1537

0.837

AYI70_g2482

0.836

AYI70_g1494

0.829

AYI70_g3088

0.820

AYI70_g11678

0.815

AYI70_g11407

0.815

Your Current Organism:

Smittium culicis

NCBI taxonomy Id: 133412
Other names: S. culicis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYI70_g11407	AYI70_g1494	A0A1R1X1X7	A0A1R1YD21	Periodic tryptophan protein 2-like protein.	Ribosomal RNA-processing protein 12.	0.986
AYI70_g11407	AYI70_g1537	A0A1R1X1X7	A0A1R1YC70	Periodic tryptophan protein 2-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.868
AYI70_g11407	AYI70_g2057	A0A1R1X1X7	A0A1R1Y9X1	Periodic tryptophan protein 2-like protein.	U3 small nucleolar RNA-associated protein 21-like protein.	0.996
AYI70_g11407	AYI70_g2482	A0A1R1X1X7	A0A1R1Y7X9	Periodic tryptophan protein 2-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.762
AYI70_g11407	AYI70_g2696	A0A1R1X1X7	A0A1R1Y6Y7	Periodic tryptophan protein 2-like protein.	TPR repeat-containing protein.	0.815
AYI70_g11407	AYI70_g3088	A0A1R1X1X7	A0A1R1Y524	Periodic tryptophan protein 2-like protein.	U3 small nucleolar RNA-associated protein 18-like protein.	0.994
AYI70_g11407	AYI70_g6080	A0A1R1X1X7	A0A1R1XRN4	Periodic tryptophan protein 2-like protein.	WD repeat-containing protein 3.	0.996
AYI70_g11407	AYI70_g6183	A0A1R1X1X7	A0A1R1XR50	Periodic tryptophan protein 2-like protein.	HEAT repeat-containing protein 1.	0.996
AYI70_g11407	AYI70_g9814	A0A1R1X1X7	A0A1R1X9L2	Periodic tryptophan protein 2-like protein.	Putative U3 small nucleolar RNA-associated protein 13.	0.996
AYI70_g11678	AYI70_g1494	A0A1R1X0U4	A0A1R1YD21	Periodic tryptophan protein 2-like protein.	Ribosomal RNA-processing protein 12.	0.986
AYI70_g11678	AYI70_g1537	A0A1R1X0U4	A0A1R1YC70	Periodic tryptophan protein 2-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.868
AYI70_g11678	AYI70_g2057	A0A1R1X0U4	A0A1R1Y9X1	Periodic tryptophan protein 2-like protein.	U3 small nucleolar RNA-associated protein 21-like protein.	0.996
AYI70_g11678	AYI70_g2482	A0A1R1X0U4	A0A1R1Y7X9	Periodic tryptophan protein 2-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.762
AYI70_g11678	AYI70_g2696	A0A1R1X0U4	A0A1R1Y6Y7	Periodic tryptophan protein 2-like protein.	TPR repeat-containing protein.	0.815
AYI70_g11678	AYI70_g3088	A0A1R1X0U4	A0A1R1Y524	Periodic tryptophan protein 2-like protein.	U3 small nucleolar RNA-associated protein 18-like protein.	0.994
AYI70_g11678	AYI70_g6080	A0A1R1X0U4	A0A1R1XRN4	Periodic tryptophan protein 2-like protein.	WD repeat-containing protein 3.	0.996
AYI70_g11678	AYI70_g6183	A0A1R1X0U4	A0A1R1XR50	Periodic tryptophan protein 2-like protein.	HEAT repeat-containing protein 1.	0.996
AYI70_g11678	AYI70_g9814	A0A1R1X0U4	A0A1R1X9L2	Periodic tryptophan protein 2-like protein.	Putative U3 small nucleolar RNA-associated protein 13.	0.996
AYI70_g1494	AYI70_g11407	A0A1R1YD21	A0A1R1X1X7	Ribosomal RNA-processing protein 12.	Periodic tryptophan protein 2-like protein.	0.986
AYI70_g1494	AYI70_g11678	A0A1R1YD21	A0A1R1X0U4	Ribosomal RNA-processing protein 12.	Periodic tryptophan protein 2-like protein.	0.986