STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYI70_g2732Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (385 aa)    
Predicted Functional Partners:
AYI70_g12400
Signal recognition particle SEC65 subunit.
   
 0.982
AYI70_g8671
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 0.981
AYI70_g134
Signal recognition particle subunit SRP68.
    
 0.981
AYI70_g11686
Signal recognition particle receptor subunit alpha.
 
0.920
AYI70_g3219
Signal recognition particle receptor subunit alpha.
 
0.920
AYI70_g6552
60S ribosomal protein L5.
   
 
 0.913
AYI70_g12096
60S ribosomal protein L35.
   
 
 0.906
AYI70_g7651
40S ribosomal protein S3-1; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.896
AYI70_g1769
60S ribosomal protein L7-B.
   
 
 0.895
AYI70_g1106
Protein transport protein SEC61 subunit alpha; Belongs to the SecY/SEC61-alpha family.
    
 0.864
Your Current Organism:
Smittium culicis
NCBI taxonomy Id: 133412
Other names: S. culicis
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.