STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF82737.1Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (796 aa)    
Predicted Functional Partners:
AKF82739.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.853
AKF82738.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.764
AKF80343.1
Biopolymer transporter TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.707
AKF80386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.655
AKF79596.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.654
AKF79573.1
Biopolymer transporter TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.623
AKF79388.1
Biopolymer transporter TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.617
AKF85632.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.594
AKF86200.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.579
AKF80070.1
Biopolymer transporter TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.571
Your Current Organism:
Myxococcus fulvus 124B02
NCBI taxonomy Id: 1334629
Other names: M. fulvus 124B02
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