Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avbf_00542 | Avbf_00567 | A0A444TMX8 | A0A444TD57 | Putative ATP-dependent RNA helicase YTHDC2. | Uncharacterized protein. | 0.600 |
Avbf_00542 | Avbf_02088 | A0A444TMX8 | A0A444TLF2 | Putative ATP-dependent RNA helicase YTHDC2. | YTH domain-containing protein 1. | 0.506 |
Avbf_00542 | Avbf_04312 | A0A444TMX8 | A0A444TFA2 | Putative ATP-dependent RNA helicase YTHDC2. | Aly/REF export factor 2. | 0.867 |
Avbf_00542 | Avbf_06164 | A0A444TMX8 | A0A444T7J2 | Putative ATP-dependent RNA helicase YTHDC2. | Cleavage and polyadenylation specificity factor subunit. | 0.849 |
Avbf_00542 | Avbf_06786 | A0A444TMX8 | A0A444SRK4 | Putative ATP-dependent RNA helicase YTHDC2. | Cleavage and polyadenylation specificity factor subunit 4. | 0.600 |
Avbf_00542 | Avbf_07487 | A0A444TMX8 | A0A444SUL2 | Putative ATP-dependent RNA helicase YTHDC2. | RNA-binding protein 1. | 0.727 |
Avbf_00542 | Avbf_10302 | A0A444TMX8 | A0A444SBG4 | Putative ATP-dependent RNA helicase YTHDC2. | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.987 |
Avbf_00542 | Avbf_10371 | A0A444TMX8 | A0A444SF60 | Putative ATP-dependent RNA helicase YTHDC2. | Zinc finger CCCH domain-containing protein 7. | 0.600 |
Avbf_00542 | Avbf_13385 | A0A444TMX8 | A0A444T379 | Putative ATP-dependent RNA helicase YTHDC2. | Zinc finger CCCH domain-containing protein 3. | 0.634 |
Avbf_00542 | Avbf_13829 | A0A444TMX8 | A0A444T524 | Putative ATP-dependent RNA helicase YTHDC2. | Pre-mRNA 3'-end-processing factor FIP1. | 0.981 |
Avbf_00567 | Avbf_00542 | A0A444TD57 | A0A444TMX8 | Uncharacterized protein. | Putative ATP-dependent RNA helicase YTHDC2. | 0.600 |
Avbf_00567 | Avbf_02088 | A0A444TD57 | A0A444TLF2 | Uncharacterized protein. | YTH domain-containing protein 1. | 0.593 |
Avbf_00567 | Avbf_04312 | A0A444TD57 | A0A444TFA2 | Uncharacterized protein. | Aly/REF export factor 2. | 0.716 |
Avbf_00567 | Avbf_06164 | A0A444TD57 | A0A444T7J2 | Uncharacterized protein. | Cleavage and polyadenylation specificity factor subunit. | 0.751 |
Avbf_00567 | Avbf_10302 | A0A444TD57 | A0A444SBG4 | Uncharacterized protein. | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] | 0.981 |
Avbf_00567 | Avbf_13829 | A0A444TD57 | A0A444T524 | Uncharacterized protein. | Pre-mRNA 3'-end-processing factor FIP1. | 0.984 |
Avbf_02088 | Avbf_00542 | A0A444TLF2 | A0A444TMX8 | YTH domain-containing protein 1. | Putative ATP-dependent RNA helicase YTHDC2. | 0.506 |
Avbf_02088 | Avbf_00567 | A0A444TLF2 | A0A444TD57 | YTH domain-containing protein 1. | Uncharacterized protein. | 0.593 |
Avbf_02088 | Avbf_06164 | A0A444TLF2 | A0A444T7J2 | YTH domain-containing protein 1. | Cleavage and polyadenylation specificity factor subunit. | 0.586 |
Avbf_02088 | Avbf_06786 | A0A444TLF2 | A0A444SRK4 | YTH domain-containing protein 1. | Cleavage and polyadenylation specificity factor subunit 4. | 0.593 |
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