Avbf_08741 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_08741

Endonuclease/exonuclease/phosphatase family domain-containing protein 1. (150 aa)

Predicted Functional Partners:

Avbf_02098

0.986

Avbf_08520

0.980

Avbf_01532

0.967

Avbf_03017

0.958

Avbf_10878

0.948

Avbf_15372

0.941

Avbf_15371

0.941

Avbf_08387

0.941

Avbf_08388

0.941

Avbf_05242

0.941

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01532	Avbf_02098	A0A444TSR5	A0A444T229	RNA polymerase-associated protein LEO1.	Protein IWS1-like protein.	0.980
Avbf_01532	Avbf_03017	A0A444TSR5	A0A444SH31	RNA polymerase-associated protein LEO1.	Transcription elongation factor SPT5.	0.993
Avbf_01532	Avbf_05242	A0A444TSR5	A0A444T7N4	RNA polymerase-associated protein LEO1.	High mobility group protein DSP1.	0.988
Avbf_01532	Avbf_08387	A0A444TSR5	A0A444SZM1	RNA polymerase-associated protein LEO1.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.988
Avbf_01532	Avbf_08388	A0A444TSR5	A0A444SZM3	RNA polymerase-associated protein LEO1.	Mitochondrial import inner membrane translocase subunit Tim17-B.	0.988
Avbf_01532	Avbf_08520	A0A444TSR5	A0A444SPB5	RNA polymerase-associated protein LEO1.	FACT complex subunit spt16.	0.999
Avbf_01532	Avbf_08741	A0A444TSR5	A0A444SC10	RNA polymerase-associated protein LEO1.	Endonuclease/exonuclease/phosphatase family domain-containing protein 1.	0.967
Avbf_01532	Avbf_10878	A0A444TSR5	A0A444T976	RNA polymerase-associated protein LEO1.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.993
Avbf_01532	Avbf_15371	A0A444TSR5	A0A444SN48	RNA polymerase-associated protein LEO1.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.988
Avbf_01532	Avbf_15372	A0A444TSR5	A0A444SN39	RNA polymerase-associated protein LEO1.	ARS-binding factor 2, mitochondrial.	0.988
Avbf_02098	Avbf_01532	A0A444T229	A0A444TSR5	Protein IWS1-like protein.	RNA polymerase-associated protein LEO1.	0.980
Avbf_02098	Avbf_03017	A0A444T229	A0A444SH31	Protein IWS1-like protein.	Transcription elongation factor SPT5.	0.983
Avbf_02098	Avbf_05242	A0A444T229	A0A444T7N4	Protein IWS1-like protein.	High mobility group protein DSP1.	0.955
Avbf_02098	Avbf_08387	A0A444T229	A0A444SZM1	Protein IWS1-like protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.958
Avbf_02098	Avbf_08388	A0A444T229	A0A444SZM3	Protein IWS1-like protein.	Mitochondrial import inner membrane translocase subunit Tim17-B.	0.958
Avbf_02098	Avbf_08520	A0A444T229	A0A444SPB5	Protein IWS1-like protein.	FACT complex subunit spt16.	0.988
Avbf_02098	Avbf_08741	A0A444T229	A0A444SC10	Protein IWS1-like protein.	Endonuclease/exonuclease/phosphatase family domain-containing protein 1.	0.986
Avbf_02098	Avbf_10878	A0A444T229	A0A444T976	Protein IWS1-like protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.974
Avbf_02098	Avbf_15371	A0A444T229	A0A444SN48	Protein IWS1-like protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.958
Avbf_02098	Avbf_15372	A0A444T229	A0A444SN39	Protein IWS1-like protein.	ARS-binding factor 2, mitochondrial.	0.958