Avbf_13191 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_13191

Putative E3 ubiquitin-protein ligase UBR7. (305 aa)

Predicted Functional Partners:

Avbf_03315

0.545

Avbf_03316

0.545

Avbf_03314

0.545

Avbf_10934

0.526

Avbf_10201

0.526

Avbf_02775

0.523

Avbf_04316

0.517

Avbf_01708

0.503

Avbf_06523

0.457

Avbf_02382

0.445

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01708	Avbf_02775	A0A444TIA4	A0A444T8C7	E3 ubiquitin-protein ligase TRIP12.	E3 ubiquitin-protein ligase.	0.754
Avbf_01708	Avbf_04316	A0A444TIA4	A0A444TJE5	E3 ubiquitin-protein ligase TRIP12.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.813
Avbf_01708	Avbf_13191	A0A444TIA4	A0A444SDN9	E3 ubiquitin-protein ligase TRIP12.	Putative E3 ubiquitin-protein ligase UBR7.	0.503
Avbf_02382	Avbf_03314	A0A444TJL2	A0A444TSM0	Uncharacterized protein.	Uncharacterized protein.	0.545
Avbf_02382	Avbf_03315	A0A444TJL2	A0A444TSD2	Uncharacterized protein.	Uncharacterized protein.	0.545
Avbf_02382	Avbf_03316	A0A444TJL2	A0A444TSD5	Uncharacterized protein.	Protein unc-79-like protein.	0.545
Avbf_02382	Avbf_13191	A0A444TJL2	A0A444SDN9	Uncharacterized protein.	Putative E3 ubiquitin-protein ligase UBR7.	0.445
Avbf_02775	Avbf_01708	A0A444T8C7	A0A444TIA4	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase TRIP12.	0.754
Avbf_02775	Avbf_13191	A0A444T8C7	A0A444SDN9	E3 ubiquitin-protein ligase.	Putative E3 ubiquitin-protein ligase UBR7.	0.523
Avbf_03314	Avbf_02382	A0A444TSM0	A0A444TJL2	Uncharacterized protein.	Uncharacterized protein.	0.545
Avbf_03314	Avbf_03315	A0A444TSM0	A0A444TSD2	Uncharacterized protein.	Uncharacterized protein.	0.575
Avbf_03314	Avbf_13191	A0A444TSM0	A0A444SDN9	Uncharacterized protein.	Putative E3 ubiquitin-protein ligase UBR7.	0.545
Avbf_03315	Avbf_02382	A0A444TSD2	A0A444TJL2	Uncharacterized protein.	Uncharacterized protein.	0.545
Avbf_03315	Avbf_03314	A0A444TSD2	A0A444TSM0	Uncharacterized protein.	Uncharacterized protein.	0.575
Avbf_03315	Avbf_03316	A0A444TSD2	A0A444TSD5	Uncharacterized protein.	Protein unc-79-like protein.	0.884
Avbf_03315	Avbf_13191	A0A444TSD2	A0A444SDN9	Uncharacterized protein.	Putative E3 ubiquitin-protein ligase UBR7.	0.545
Avbf_03316	Avbf_02382	A0A444TSD5	A0A444TJL2	Protein unc-79-like protein.	Uncharacterized protein.	0.545
Avbf_03316	Avbf_03315	A0A444TSD5	A0A444TSD2	Protein unc-79-like protein.	Uncharacterized protein.	0.884
Avbf_03316	Avbf_13191	A0A444TSD5	A0A444SDN9	Protein unc-79-like protein.	Putative E3 ubiquitin-protein ligase UBR7.	0.545
Avbf_04316	Avbf_01708	A0A444TJE5	A0A444TIA4	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase TRIP12.	0.813