Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avbf_03533 | Avbf_04312 | A0A444TVT0 | A0A444TFA2 | Putative ATP-dependent RNA helicase DHX34. | Aly/REF export factor 2. | 0.909 |
Avbf_03533 | Avbf_05787 | A0A444TVT0 | A0A444SW24 | Putative ATP-dependent RNA helicase DHX34. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.985 |
Avbf_03533 | Avbf_07073 | A0A444TVT0 | A0A444SNW9 | Putative ATP-dependent RNA helicase DHX34. | Nuclear cap-binding protein subunit 1. | 0.926 |
Avbf_03533 | Avbf_07487 | A0A444TVT0 | A0A444SUL2 | Putative ATP-dependent RNA helicase DHX34. | RNA-binding protein 1. | 0.637 |
Avbf_03533 | Avbf_07688 | A0A444TVT0 | A0A444TMA9 | Putative ATP-dependent RNA helicase DHX34. | Small nuclear ribonucleoprotein G. | 0.967 |
Avbf_03533 | Avbf_08685 | A0A444TVT0 | A0A444SGJ7 | Putative ATP-dependent RNA helicase DHX34. | TAR DNA-binding protein 43. | 0.949 |
Avbf_03533 | Avbf_11209 | A0A444TVT0 | A0A444SXL8 | Putative ATP-dependent RNA helicase DHX34. | Small nuclear ribonucleoprotein Sm D3. | 0.961 |
Avbf_03533 | Avbf_13140 | A0A444TVT0 | A0A444SS56 | Putative ATP-dependent RNA helicase DHX34. | Serine/arginine-rich splicing factor 1. | 0.597 |
Avbf_03533 | Avbf_13160 | A0A444TVT0 | A0A444SK24 | Putative ATP-dependent RNA helicase DHX34. | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | 0.999 |
Avbf_03533 | Avbf_16053 | A0A444TVT0 | A0A444SS84 | Putative ATP-dependent RNA helicase DHX34. | Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.964 |
Avbf_04312 | Avbf_03533 | A0A444TFA2 | A0A444TVT0 | Aly/REF export factor 2. | Putative ATP-dependent RNA helicase DHX34. | 0.909 |
Avbf_04312 | Avbf_05787 | A0A444TFA2 | A0A444SW24 | Aly/REF export factor 2. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.892 |
Avbf_04312 | Avbf_07073 | A0A444TFA2 | A0A444SNW9 | Aly/REF export factor 2. | Nuclear cap-binding protein subunit 1. | 0.990 |
Avbf_04312 | Avbf_07487 | A0A444TFA2 | A0A444SUL2 | Aly/REF export factor 2. | RNA-binding protein 1. | 0.939 |
Avbf_04312 | Avbf_07688 | A0A444TFA2 | A0A444TMA9 | Aly/REF export factor 2. | Small nuclear ribonucleoprotein G. | 0.890 |
Avbf_04312 | Avbf_08685 | A0A444TFA2 | A0A444SGJ7 | Aly/REF export factor 2. | TAR DNA-binding protein 43. | 0.940 |
Avbf_04312 | Avbf_11209 | A0A444TFA2 | A0A444SXL8 | Aly/REF export factor 2. | Small nuclear ribonucleoprotein Sm D3. | 0.924 |
Avbf_04312 | Avbf_13140 | A0A444TFA2 | A0A444SS56 | Aly/REF export factor 2. | Serine/arginine-rich splicing factor 1. | 0.985 |
Avbf_04312 | Avbf_16053 | A0A444TFA2 | A0A444SS84 | Aly/REF export factor 2. | Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.915 |
Avbf_05787 | Avbf_03533 | A0A444SW24 | A0A444TVT0 | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | Putative ATP-dependent RNA helicase DHX34. | 0.985 |
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