STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_06270RNA polymerase II-associated factor 1-like protein. (529 aa)    
Predicted Functional Partners:
Avbf_13876
Parafibromin.
   
 0.999
Avbf_01532
RNA polymerase-associated protein LEO1.
   
 0.999
Avbf_07805
WD repeat-containing protein 61.
   
 0.997
Avbf_08520
FACT complex subunit spt16.
    
 0.996
Avbf_04691
DNA-directed RNA polymerase II subunit RPB3.
   
 0.992
Avbf_03017
Transcription elongation factor SPT5.
   
 0.987
Avbf_02322
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.985
Avbf_10878
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.977
Avbf_04034
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.975
Avbf_01976
DNA-directed RNA polymerase II subunit RPB7.
   
  0.970
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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