STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_07984E3 ubiquitin-protein ligase SHPRH. (801 aa)    
Predicted Functional Partners:
Avbf_12168
Histone H2A deubiquitinase MYSM1.
   
 0.978
Avbf_16365
Fanconi anemia group M protein.
    
 0.968
Avbf_02853
PHD finger protein 20-like protein 1.
    
 0.954
Avbf_06023
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.952
Avbf_03180
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.950
Avbf_04691
DNA-directed RNA polymerase II subunit RPB3.
   
 0.941
Avbf_16153
Actin-related protein 5; Belongs to the actin family.
    
 0.939
Avbf_07511
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 0.939
Avbf_17268
INO80 complex subunit C.
    
 0.930
Avbf_11951
Histone H2A; Belongs to the histone H2A family.
    
 0.918
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
Server load: low (20%) [HD]