Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avbf_04046 | Avbf_14194 | A0A444TT33 | A0A444SLA4 | Integrator complex subunit 3. | Uncharacterized protein. | 0.704 |
Avbf_04046 | Avbf_16465 | A0A444TT33 | A0A444T4D1 | Integrator complex subunit 3. | Uncharacterized protein. | 0.990 |
Avbf_04046 | Avbf_16466 | A0A444TT33 | A0A444T4H0 | Integrator complex subunit 3. | Integrator complex subunit 1. | 0.990 |
Avbf_04829 | Avbf_05828 | A0A444TBV7 | A0A444STB3 | Replication factor C subunit 4. | DNA polymerase alpha catalytic subunit. | 0.944 |
Avbf_04829 | Avbf_09405 | A0A444TBV7 | A0A444SHD1 | Replication factor C subunit 4. | Nibrin. | 0.823 |
Avbf_04829 | Avbf_14194 | A0A444TBV7 | A0A444SLA4 | Replication factor C subunit 4. | Uncharacterized protein. | 0.632 |
Avbf_05103 | Avbf_05828 | A0A444TDG9 | A0A444STB3 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | DNA polymerase alpha catalytic subunit. | 0.447 |
Avbf_05103 | Avbf_10400 | A0A444TDG9 | A0A444T9C0 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. | 0.856 |
Avbf_05103 | Avbf_14194 | A0A444TDG9 | A0A444SLA4 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | Uncharacterized protein. | 0.650 |
Avbf_05103 | Avbf_14422 | A0A444TDG9 | A0A444SRH8 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | H/ACA ribonucleoprotein complex subunit 2-like protein. | 0.999 |
Avbf_05828 | Avbf_04829 | A0A444STB3 | A0A444TBV7 | DNA polymerase alpha catalytic subunit. | Replication factor C subunit 4. | 0.944 |
Avbf_05828 | Avbf_05103 | A0A444STB3 | A0A444TDG9 | DNA polymerase alpha catalytic subunit. | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | 0.447 |
Avbf_05828 | Avbf_09405 | A0A444STB3 | A0A444SHD1 | DNA polymerase alpha catalytic subunit. | Nibrin. | 0.663 |
Avbf_05828 | Avbf_14194 | A0A444STB3 | A0A444SLA4 | DNA polymerase alpha catalytic subunit. | Uncharacterized protein. | 0.641 |
Avbf_07314 | Avbf_14194 | A0A444THW4 | A0A444SLA4 | Golgin subfamily A member 7B. | Uncharacterized protein. | 0.773 |
Avbf_09405 | Avbf_04829 | A0A444SHD1 | A0A444TBV7 | Nibrin. | Replication factor C subunit 4. | 0.823 |
Avbf_09405 | Avbf_05828 | A0A444SHD1 | A0A444STB3 | Nibrin. | DNA polymerase alpha catalytic subunit. | 0.663 |
Avbf_09405 | Avbf_14194 | A0A444SHD1 | A0A444SLA4 | Nibrin. | Uncharacterized protein. | 0.864 |
Avbf_10400 | Avbf_05103 | A0A444T9C0 | A0A444TDG9 | Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | 0.856 |
Avbf_10400 | Avbf_14194 | A0A444T9C0 | A0A444SLA4 | Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. | Uncharacterized protein. | 0.688 |
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