Avbf_16446 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_16446

Uncharacterized protein. (59 aa)

Predicted Functional Partners:

Avbf_09211

0.885

Avbf_09116

0.767

Avbf_18653

0.754

Avbf_03762

0.726

Avbf_11191

0.723

Avbf_10523

0.703

Avbf_06891

0.703

Avbf_16863

0.703

Avbf_07927

0.673

Avbf_08649

0.673

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_03762	Avbf_06891	A0A444TGR9	A0A444SNZ2	Rab5 GDP/GTP exchange factor.	Ankyrin repeat domain-containing protein 27.	0.636
Avbf_03762	Avbf_09116	A0A444TGR9	A0A444SWD7	Rab5 GDP/GTP exchange factor.	Protein prenyltransferase alpha subunit repeat-containing protein 1-B.	0.536
Avbf_03762	Avbf_09211	A0A444TGR9	A0A444T5Y5	Rab5 GDP/GTP exchange factor.	Cyclin-G-associated kinase.	0.809
Avbf_03762	Avbf_10523	A0A444TGR9	A0A444SLZ5	Rab5 GDP/GTP exchange factor.	GTPase-activating protein and VPS9 domain-containing protein 1.	0.730
Avbf_03762	Avbf_11191	A0A444TGR9	A0A444SJL8	Rab5 GDP/GTP exchange factor.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.965
Avbf_03762	Avbf_16446	A0A444TGR9	A0A444SNI8	Rab5 GDP/GTP exchange factor.	Uncharacterized protein.	0.726
Avbf_03762	Avbf_16863	A0A444TGR9	A0A444SQE1	Rab5 GDP/GTP exchange factor.	Receptor-mediated endocytosis protein 6-like protein.	0.730
Avbf_03762	Avbf_18653	A0A444TGR9	A0A444SXQ9	Rab5 GDP/GTP exchange factor.	Rab proteins geranylgeranyltransferase component A 2.	0.946
Avbf_06891	Avbf_03762	A0A444SNZ2	A0A444TGR9	Ankyrin repeat domain-containing protein 27.	Rab5 GDP/GTP exchange factor.	0.636
Avbf_06891	Avbf_09211	A0A444SNZ2	A0A444T5Y5	Ankyrin repeat domain-containing protein 27.	Cyclin-G-associated kinase.	0.734
Avbf_06891	Avbf_11191	A0A444SNZ2	A0A444SJL8	Ankyrin repeat domain-containing protein 27.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.744
Avbf_06891	Avbf_16446	A0A444SNZ2	A0A444SNI8	Ankyrin repeat domain-containing protein 27.	Uncharacterized protein.	0.703
Avbf_06891	Avbf_18653	A0A444SNZ2	A0A444SXQ9	Ankyrin repeat domain-containing protein 27.	Rab proteins geranylgeranyltransferase component A 2.	0.692
Avbf_07927	Avbf_16446	A0A444T1F0	A0A444SNI8	Hermansky-Pudlak syndrome 1 protein-like.	Uncharacterized protein.	0.673
Avbf_08649	Avbf_16446	A0A444TES6	A0A444SNI8	Uncharacterized protein.	Uncharacterized protein.	0.673
Avbf_09116	Avbf_03762	A0A444SWD7	A0A444TGR9	Protein prenyltransferase alpha subunit repeat-containing protein 1-B.	Rab5 GDP/GTP exchange factor.	0.536
Avbf_09116	Avbf_11191	A0A444SWD7	A0A444SJL8	Protein prenyltransferase alpha subunit repeat-containing protein 1-B.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.848
Avbf_09116	Avbf_16446	A0A444SWD7	A0A444SNI8	Protein prenyltransferase alpha subunit repeat-containing protein 1-B.	Uncharacterized protein.	0.767
Avbf_09116	Avbf_18653	A0A444SWD7	A0A444SXQ9	Protein prenyltransferase alpha subunit repeat-containing protein 1-B.	Rab proteins geranylgeranyltransferase component A 2.	0.991
Avbf_09211	Avbf_03762	A0A444T5Y5	A0A444TGR9	Cyclin-G-associated kinase.	Rab5 GDP/GTP exchange factor.	0.809