Avbf_10894 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_10894

Poly [ADP-ribose] polymerase. (160 aa)

Predicted Functional Partners:

Avbf_03180

0.913

Avbf_16558

0.912

Avbf_17851

0.903

Avbf_06342

0.897

Avbf_05011

0.894

Avbf_04829

0.893

Avbf_01583

0.892

Avbf_05637

0.881

Avbf_07748

0.880

Avbf_02298

0.876

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01583	Avbf_03180	A0A444TTZ8	A0A444SVX6	Poly(ADP-ribose) glycohydrolase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.836
Avbf_01583	Avbf_05011	A0A444TTZ8	A0A444STT4	Poly(ADP-ribose) glycohydrolase.	Poly [ADP-ribose] polymerase 2.	0.877
Avbf_01583	Avbf_05637	A0A444TTZ8	A0A444TLS2	Poly(ADP-ribose) glycohydrolase.	Poly [ADP-ribose] polymerase 2.	0.877
Avbf_01583	Avbf_06342	A0A444TTZ8	A0A444SVA8	Poly(ADP-ribose) glycohydrolase.	Breast cancer type 2 susceptibility protein-like.	0.489
Avbf_01583	Avbf_10894	A0A444TTZ8	A0A444SQL3	Poly(ADP-ribose) glycohydrolase.	Poly [ADP-ribose] polymerase.	0.892
Avbf_01583	Avbf_17851	A0A444TTZ8	A0A444SQK6	Poly(ADP-ribose) glycohydrolase.	Poly [ADP-ribose] polymerase 3.	0.877
Avbf_02298	Avbf_03180	A0A444TIJ3	A0A444SVX6	Double-strand-break repair protein rad21-like protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.954
Avbf_02298	Avbf_05011	A0A444TIJ3	A0A444STT4	Double-strand-break repair protein rad21-like protein.	Poly [ADP-ribose] polymerase 2.	0.839
Avbf_02298	Avbf_05637	A0A444TIJ3	A0A444TLS2	Double-strand-break repair protein rad21-like protein.	Poly [ADP-ribose] polymerase 2.	0.839
Avbf_02298	Avbf_06342	A0A444TIJ3	A0A444SVA8	Double-strand-break repair protein rad21-like protein.	Breast cancer type 2 susceptibility protein-like.	0.784
Avbf_02298	Avbf_07748	A0A444TIJ3	A0A444TJH3	Double-strand-break repair protein rad21-like protein.	Replication factor C subunit 3.	0.722
Avbf_02298	Avbf_10894	A0A444TIJ3	A0A444SQL3	Double-strand-break repair protein rad21-like protein.	Poly [ADP-ribose] polymerase.	0.876
Avbf_02298	Avbf_17851	A0A444TIJ3	A0A444SQK6	Double-strand-break repair protein rad21-like protein.	Poly [ADP-ribose] polymerase 3.	0.839
Avbf_03180	Avbf_01583	A0A444SVX6	A0A444TTZ8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Poly(ADP-ribose) glycohydrolase.	0.836
Avbf_03180	Avbf_02298	A0A444SVX6	A0A444TIJ3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Double-strand-break repair protein rad21-like protein.	0.954
Avbf_03180	Avbf_04829	A0A444SVX6	A0A444TBV7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Replication factor C subunit 4.	0.999
Avbf_03180	Avbf_05011	A0A444SVX6	A0A444STT4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Poly [ADP-ribose] polymerase 2.	0.872
Avbf_03180	Avbf_05637	A0A444SVX6	A0A444TLS2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Poly [ADP-ribose] polymerase 2.	0.872
Avbf_03180	Avbf_06342	A0A444SVX6	A0A444SVA8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Breast cancer type 2 susceptibility protein-like.	0.873
Avbf_03180	Avbf_07748	A0A444SVX6	A0A444TJH3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Replication factor C subunit 3.	0.994