Avbf_15025 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_15025

C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8. (282 aa)

Predicted Functional Partners:

Avbf_15362

0.914

Avbf_01233

0.858

Avbf_05739

0.828

Avbf_15251

0.824

Avbf_09898

0.824

Avbf_01994

0.711

Avbf_09182

0.709

Avbf_16366

0.702

Avbf_07726

0.699

Avbf_07965

0.690

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01233	Avbf_01994	A0A444TNU1	A0A444TIV9	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Glutamate-rich WD repeat-containing protein 1.	0.964
Avbf_01233	Avbf_05739	A0A444TNU1	A0A444TDE7	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	0.981
Avbf_01233	Avbf_09898	A0A444TNU1	A0A444SYY5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	60S ribosomal protein L5.	0.962
Avbf_01233	Avbf_15025	A0A444TNU1	A0A444SRX2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	0.858
Avbf_01233	Avbf_15251	A0A444TNU1	A0A444SCP2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	60S ribosomal protein L5.	0.962
Avbf_01233	Avbf_15362	A0A444TNU1	A0A444SFT5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosome production factor 2-like protein.	0.999
Avbf_01994	Avbf_01233	A0A444TIV9	A0A444TNU1	Glutamate-rich WD repeat-containing protein 1.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.964
Avbf_01994	Avbf_05739	A0A444TIV9	A0A444TDE7	Glutamate-rich WD repeat-containing protein 1.	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	0.871
Avbf_01994	Avbf_09898	A0A444TIV9	A0A444SYY5	Glutamate-rich WD repeat-containing protein 1.	60S ribosomal protein L5.	0.480
Avbf_01994	Avbf_15025	A0A444TIV9	A0A444SRX2	Glutamate-rich WD repeat-containing protein 1.	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	0.711
Avbf_01994	Avbf_15251	A0A444TIV9	A0A444SCP2	Glutamate-rich WD repeat-containing protein 1.	60S ribosomal protein L5.	0.480
Avbf_01994	Avbf_15362	A0A444TIV9	A0A444SFT5	Glutamate-rich WD repeat-containing protein 1.	Ribosome production factor 2-like protein.	0.971
Avbf_05739	Avbf_01233	A0A444TDE7	A0A444TNU1	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.981
Avbf_05739	Avbf_01994	A0A444TDE7	A0A444TIV9	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	Glutamate-rich WD repeat-containing protein 1.	0.871
Avbf_05739	Avbf_09898	A0A444TDE7	A0A444SYY5	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	60S ribosomal protein L5.	0.999
Avbf_05739	Avbf_15025	A0A444TDE7	A0A444SRX2	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	0.828
Avbf_05739	Avbf_15251	A0A444TDE7	A0A444SCP2	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	60S ribosomal protein L5.	0.999
Avbf_05739	Avbf_15362	A0A444TDE7	A0A444SFT5	60S ribosomal protein L11-2; Belongs to the universal ribosomal protein uL5 family.	Ribosome production factor 2-like protein.	0.987
Avbf_07726	Avbf_15025	A0A444SC06	A0A444SRX2	7SK snRNA methylphosphate capping enzyme.	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	0.699
Avbf_07965	Avbf_09182	A0A444T8D9	A0A444SBU4	Vinexin.	SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family.	0.768