STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_09077Putative helicase with zinc finger domain. (1685 aa)    
Predicted Functional Partners:
Avbf_05245
Piwi-like protein 1.
    
 0.894
Avbf_04091
Roquin-1.
   
 
 0.783
Avbf_02301
Regulator of nonsense transcripts 1.
    
 
0.743
Avbf_03480
Vacuolar protein sorting-associated protein 41-like protein.
    
   0.743
Avbf_01344
CCR4-NOT transcription complex subunit 1.
   
 
 0.699
Avbf_04274
PHD finger protein 3.
   
  
 0.666
Avbf_04607
CREB-binding protein.
   
 
 0.655
Avbf_04577
CREB-binding protein.
   
 
 0.655
Avbf_02853
PHD finger protein 20-like protein 1.
     
 0.627
Avbf_08090
Uncharacterized protein.
   
 
 0.615
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.