Avbf_11811 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_11811

Negative elongation factor A. (663 aa)

Predicted Functional Partners:

Avbf_14577

0.998

Avbf_05441

0.998

Avbf_03498

0.998

Avbf_03017

0.983

Avbf_10878

0.974

Avbf_02322

0.945

Avbf_04691

0.933

Avbf_04034

0.926

Avbf_03363

0.924

Avbf_07941

0.923

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_02322	Avbf_03017	A0A444TEN6	A0A444SH31	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5.	0.994
Avbf_02322	Avbf_03498	A0A444TEN6	A0A444T421	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Negative elongation factor B.	0.762
Avbf_02322	Avbf_04034	A0A444TEN6	A0A444TUR5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Avbf_02322	Avbf_04691	A0A444TEN6	A0A444SUG5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.998
Avbf_02322	Avbf_05441	A0A444TEN6	A0A444T0Q9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Negative elongation factor D.	0.632
Avbf_02322	Avbf_07941	A0A444TEN6	A0A444TBK9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
Avbf_02322	Avbf_10878	A0A444TEN6	A0A444T976	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.989
Avbf_02322	Avbf_11811	A0A444TEN6	A0A444SW01	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Negative elongation factor A.	0.945
Avbf_02322	Avbf_14577	A0A444TEN6	A0A444SLP0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Negative elongation factor E.	0.973
Avbf_03017	Avbf_02322	A0A444SH31	A0A444TEN6	Transcription elongation factor SPT5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
Avbf_03017	Avbf_03498	A0A444SH31	A0A444T421	Transcription elongation factor SPT5.	Negative elongation factor B.	0.981
Avbf_03017	Avbf_04034	A0A444SH31	A0A444TUR5	Transcription elongation factor SPT5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
Avbf_03017	Avbf_04691	A0A444SH31	A0A444SUG5	Transcription elongation factor SPT5.	DNA-directed RNA polymerase II subunit RPB3.	0.994
Avbf_03017	Avbf_05441	A0A444SH31	A0A444T0Q9	Transcription elongation factor SPT5.	Negative elongation factor D.	0.968
Avbf_03017	Avbf_07941	A0A444SH31	A0A444TBK9	Transcription elongation factor SPT5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.983
Avbf_03017	Avbf_10878	A0A444SH31	A0A444T976	Transcription elongation factor SPT5.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.999
Avbf_03017	Avbf_11811	A0A444SH31	A0A444SW01	Transcription elongation factor SPT5.	Negative elongation factor A.	0.983
Avbf_03017	Avbf_14577	A0A444SH31	A0A444SLP0	Transcription elongation factor SPT5.	Negative elongation factor E.	0.976
Avbf_03363	Avbf_03498	A0A444TMA5	A0A444T421	Xylosyltransferase oxt.	Negative elongation factor B.	0.761
Avbf_03363	Avbf_05441	A0A444TMA5	A0A444T0Q9	Xylosyltransferase oxt.	Negative elongation factor D.	0.761