Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_10249Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (266 aa)    
Predicted Functional Partners:
Avbf_12909
Glutamine synthetase.
    
 
 0.535
Avbf_12910
Glutamine synthetase; Belongs to the glutamine synthetase family.
    
 
 0.535
Avbf_16227
Glutamine synthetase.
    
 
 0.535
Avbf_16356
Glutamine synthetase.
    
 
 0.535
Avbf_16990
Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.
  
     0.474
Avbf_12985
Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.
  
     0.458
Avbf_06086
Protein mab-21.
  
     0.432
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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