Avbf_10169 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_10169

Uncharacterized protein. (71 aa)

Predicted Functional Partners:

Avbf_07159

0.999

Avbf_08198

0.999

Avbf_08801

0.999

Avbf_10522

0.998

Avbf_09694

0.998

Avbf_00477

0.998

Avbf_11236

0.995

Avbf_06359

0.993

Avbf_10791

0.960

Avbf_06428

0.922

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00477	Avbf_06359	A0A444TS65	A0A444TKS4	T-complex protein 1 subunit delta.	Endoplasmic reticulum membrane-associated RNA degradation protein.	0.997
Avbf_00477	Avbf_06428	A0A444TS65	A0A444SST8	T-complex protein 1 subunit delta.	Prefoldin subunit 5.	0.983
Avbf_00477	Avbf_07159	A0A444TS65	A0A444SEI9	T-complex protein 1 subunit delta.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
Avbf_00477	Avbf_08198	A0A444TS65	A0A444T317	T-complex protein 1 subunit delta.	T-complex protein 1 subunit beta.	0.999
Avbf_00477	Avbf_08801	A0A444TS65	A0A444TPI2	T-complex protein 1 subunit delta.	T-complex protein 1 subunit alpha.	0.999
Avbf_00477	Avbf_09694	A0A444TS65	A0A444SIH8	T-complex protein 1 subunit delta.	T-complex protein 1 subunit epsilon; Belongs to the TCP-1 chaperonin family.	0.999
Avbf_00477	Avbf_10169	A0A444TS65	A0A444SXY4	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.998
Avbf_00477	Avbf_10522	A0A444TS65	A0A444SHN1	T-complex protein 1 subunit delta.	T-complex protein 1 subunit theta.	0.999
Avbf_00477	Avbf_10791	A0A444TS65	A0A444TCM3	T-complex protein 1 subunit delta.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.960
Avbf_00477	Avbf_11236	A0A444TS65	A0A444T474	T-complex protein 1 subunit delta.	T-complex protein 1 subunit gamma.	0.999
Avbf_06359	Avbf_00477	A0A444TKS4	A0A444TS65	Endoplasmic reticulum membrane-associated RNA degradation protein.	T-complex protein 1 subunit delta.	0.997
Avbf_06359	Avbf_06428	A0A444TKS4	A0A444SST8	Endoplasmic reticulum membrane-associated RNA degradation protein.	Prefoldin subunit 5.	0.905
Avbf_06359	Avbf_07159	A0A444TKS4	A0A444SEI9	Endoplasmic reticulum membrane-associated RNA degradation protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.998
Avbf_06359	Avbf_08198	A0A444TKS4	A0A444T317	Endoplasmic reticulum membrane-associated RNA degradation protein.	T-complex protein 1 subunit beta.	0.998
Avbf_06359	Avbf_08801	A0A444TKS4	A0A444TPI2	Endoplasmic reticulum membrane-associated RNA degradation protein.	T-complex protein 1 subunit alpha.	0.998
Avbf_06359	Avbf_09694	A0A444TKS4	A0A444SIH8	Endoplasmic reticulum membrane-associated RNA degradation protein.	T-complex protein 1 subunit epsilon; Belongs to the TCP-1 chaperonin family.	0.998
Avbf_06359	Avbf_10169	A0A444TKS4	A0A444SXY4	Endoplasmic reticulum membrane-associated RNA degradation protein.	Uncharacterized protein.	0.993
Avbf_06359	Avbf_10522	A0A444TKS4	A0A444SHN1	Endoplasmic reticulum membrane-associated RNA degradation protein.	T-complex protein 1 subunit theta.	0.998
Avbf_06359	Avbf_10791	A0A444TKS4	A0A444TCM3	Endoplasmic reticulum membrane-associated RNA degradation protein.	10 kDa heat shock protein, mitochondrial; Belongs to the GroES chaperonin family.	0.960
Avbf_06428	Avbf_00477	A0A444SST8	A0A444TS65	Prefoldin subunit 5.	T-complex protein 1 subunit delta.	0.983