STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_134245-hydroxytryptamine receptor. (173 aa)    
Predicted Functional Partners:
Avbf_10227
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
Avbf_11392
Ribosomal RNA small subunit methyltransferase NEP1.
   
 0.999
Avbf_03478
U3 small nucleolar RNA-associated protein 14-like protein C.
   
 0.999
Avbf_14054
Uncharacterized protein.
   
 0.998
Avbf_17376
U3 small nucleolar ribonucleoprotein IMP3.
   
 0.998
Avbf_06441
RNA 3'-terminal phosphate cyclase-like protein.
   
 0.998
Avbf_04102
U3 small nucleolar RNA-interacting protein 2.
   
 0.998
Avbf_10076
Neuroguidin.
   
 0.998
Avbf_02542
DDB1-and CUL4-associated factor 13.
   
 0.998
Avbf_01305
WD repeat-containing protein 46.
   
 0.998
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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