Avbf_15753 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_15753

rRNA methyltransferase 3, mitochondrial. (506 aa)

Predicted Functional Partners:

Avbf_02510

0.962

Avbf_03677

0.959

Avbf_09395

0.957

Avbf_07852

0.956

Avbf_04985

0.953

Avbf_04295

0.953

Avbf_02222

0.950

Avbf_03782

0.946

Avbf_01580

0.946

Avbf_05302

0.944

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01580	Avbf_02222	A0A444TSB3	A0A444SYR0	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	39S ribosomal protein L39, mitochondrial.	0.944
Avbf_01580	Avbf_02510	A0A444TSB3	A0A444SQU3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial assembly of ribosomal large subunit protein 1.	0.980
Avbf_01580	Avbf_03677	A0A444TSB3	A0A444TH07	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.976
Avbf_01580	Avbf_03782	A0A444TSB3	A0A444TNK6	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Putative 39S ribosomal protein L24, mitochondrial.	0.991
Avbf_01580	Avbf_04295	A0A444TSB3	A0A444TNH8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	39S ribosomal protein L17, mitochondrial.	0.995
Avbf_01580	Avbf_04985	A0A444TSB3	A0A444SKH3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	39S ribosomal protein L3, mitochondrial.	0.991
Avbf_01580	Avbf_05302	A0A444TSB3	A0A444SIJ7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	GA-binding protein subunit beta-2.	0.999
Avbf_01580	Avbf_07852	A0A444TSB3	A0A444SGT5	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	39S ribosomal protein L13, mitochondrial.	0.994
Avbf_01580	Avbf_09395	A0A444TSB3	A0A444THY4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	tRNA modification GTPase GTPBP3, mitochondrial.	0.948
Avbf_01580	Avbf_15753	A0A444TSB3	A0A444SYX5	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	rRNA methyltransferase 3, mitochondrial.	0.946
Avbf_02222	Avbf_01580	A0A444SYR0	A0A444TSB3	39S ribosomal protein L39, mitochondrial.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.944
Avbf_02222	Avbf_02510	A0A444SYR0	A0A444SQU3	39S ribosomal protein L39, mitochondrial.	Mitochondrial assembly of ribosomal large subunit protein 1.	0.969
Avbf_02222	Avbf_03677	A0A444SYR0	A0A444TH07	39S ribosomal protein L39, mitochondrial.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.918
Avbf_02222	Avbf_03782	A0A444SYR0	A0A444TNK6	39S ribosomal protein L39, mitochondrial.	Putative 39S ribosomal protein L24, mitochondrial.	0.972
Avbf_02222	Avbf_04295	A0A444SYR0	A0A444TNH8	39S ribosomal protein L39, mitochondrial.	39S ribosomal protein L17, mitochondrial.	0.979
Avbf_02222	Avbf_04985	A0A444SYR0	A0A444SKH3	39S ribosomal protein L39, mitochondrial.	39S ribosomal protein L3, mitochondrial.	0.986
Avbf_02222	Avbf_05302	A0A444SYR0	A0A444SIJ7	39S ribosomal protein L39, mitochondrial.	GA-binding protein subunit beta-2.	0.980
Avbf_02222	Avbf_07852	A0A444SYR0	A0A444SGT5	39S ribosomal protein L39, mitochondrial.	39S ribosomal protein L13, mitochondrial.	0.985
Avbf_02222	Avbf_09395	A0A444SYR0	A0A444THY4	39S ribosomal protein L39, mitochondrial.	tRNA modification GTPase GTPBP3, mitochondrial.	0.895
Avbf_02222	Avbf_15753	A0A444SYR0	A0A444SYX5	39S ribosomal protein L39, mitochondrial.	rRNA methyltransferase 3, mitochondrial.	0.950